Sequence Similarity Clusters for the Entities in PDB 1AA1

Entity #1 | Chains: B,E,H,L
RIBULOSE BISPHOSPHATE CARBOXYLASE (LARGE CHAIN) protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 1279
95 % 5 10 990
90 % 23 34 170
70 % 26 42 104
50 % 30 49 131
40 % 33 58 124
30 % 48 88 93
Entity #2 | Chains: C,F,I,S
RIBULOSE BISPHOSPHATE CARBOXYLASE (SMALL CHAIN) protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 806
95 % 4 9 1110
90 % 5 10 1038
70 % 12 20 629
50 % 22 33 245
40 % 25 38 226
30 % 25 38 238

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures