Sequence Similarity Clusters for the Entities in PDB 1AA1

Entity #1 | Chains: B,E,H,L
RIBULOSE BISPHOSPHATE CARBOXYLASE (LARGE CHAIN) protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 1189
95 % 5 10 946 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 22 33 164
70 % 25 40 162
50 % 29 46 172
40 % 32 55 146
30 % 47 84 118
Entity #2 | Chains: C,F,I,S
RIBULOSE BISPHOSPHATE CARBOXYLASE (SMALL CHAIN) protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 768
95 % 4 9 1055 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 5 10 993
70 % 12 20 597
50 % 22 33 230
40 % 25 38 213
30 % 25 38 223

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.