Sequence Similarity Clusters for the Entities in PDB 1AA1

Entity #1 | Chains: B,E,H,L
RIBULOSE BISPHOSPHATE CARBOXYLASE (LARGE CHAIN) protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 1269
95 % 5 10 983 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 23 34 168
70 % 26 42 103
50 % 30 49 131
40 % 33 58 124
30 % 48 88 92
Entity #2 | Chains: C,F,I,S
RIBULOSE BISPHOSPHATE CARBOXYLASE (SMALL CHAIN) protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 802
95 % 4 9 1101 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 5 10 1031
70 % 12 20 624
50 % 22 33 241
40 % 25 38 225
30 % 25 38 234

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures