Sequence Similarity Clusters for the Entities in PDB 1AA1

Entity #1 | Chains: B,E,H,L
RIBULOSE BISPHOSPHATE CARBOXYLASE (LARGE CHAIN) protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 10 829
95 % 5 10 1015 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 24 35 194
70 % 27 43 121
50 % 33 52 125
40 % 36 61 124
30 % 51 91 100
Entity #2 | Chains: C,F,I,S
RIBULOSE BISPHOSPHATE CARBOXYLASE (SMALL CHAIN) protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 908
95 % 4 9 1117 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 5 10 1059
70 % 12 20 659
50 % 22 33 256
40 % 25 38 240
30 % 25 38 258

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures