Sequence Similarity Clusters for the Entities in PDB 1A9W

Entity #1 | Chains: A,C
HEMOGLOBIN (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 185 222 22
95 % 211 250 20 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 212 251 21
70 % 267 332 16
50 % 627 754 4
40 % 632 759 8
30 % 1081 1226 8
Entity #2 | Chains: E,F
HEMOGLOBIN (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45804
95 % 1 1 34478 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 32926
70 % 285 346 14
50 % 628 754 4
40 % 633 759 8
30 % 1082 1226 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures