Sequence Similarity Clusters for the Entities in PDB 1A9N

Entity #1 | Chains: Q,R
RNA (5'-R(*CP*CP*UP*GP*GP*UP*AP*UP*UP*GP*CP*AP*GP*UP*AP*CP*CP*UP*CP*CP*AP*GP* GP*U)-3') rna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,C
U2A' protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41236
95 % 1 1 31235 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 29906
70 % 1 1 26789
50 % 1 1 22911
40 % 1 1 20156
30 % 1 1 17056
Entity #3 | Chains: B,D
SPLICEOSOMAL U2B'' protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45702
95 % 1 1 34136 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 32651
70 % 27 65 382
50 % 27 65 446
40 % 27 65 481
30 % 27 65 481

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.