Sequence Similarity Clusters for the Entities in PDB 1A9B

Entity #1 | Chains: A,D
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3501 (ALPHA CHAIN) protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 25 1389
95 % 132 133 213 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 193 195 140
70 % 668 679 6
50 % 670 684 6
40 % 718 734 10
30 % 831 851 15
Entity #2 | Chains: B,E
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 570 588 2
95 % 612 631 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 621 640 4
70 % 848 870 4
50 % 869 892 4
40 % 869 892 8
30 % 869 892 14
Entity #3 | Chains: C,F
PEPTIDE LPPLDITPY protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.