Sequence Similarity Clusters for the Entities in PDB 1A7R

Entity #1 | Chains: L
IGG1-KAPPA D1.3 FV (LIGHT CHAIN) protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46900
95 % 13 17 3827 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 13 21 3045
70 % 61 191 72
50 % 92 308 21
40 % 276 933 5
30 % 310 1061 7
Entity #2 | Chains: H
IGG1-KAPPA D1.3 FV (HEAVY CHAIN) protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 5866
95 % 13 17 3823 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 13 17 3872
70 % 13 36 1257
50 % 177 580 7
40 % 277 933 5
30 % 311 1061 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures