Sequence Similarity Clusters for the Entities in PDB 1A6V

Entity #1 | Chains: L,M,N
B1-8 FV (LIGHT CHAIN) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15906
95 % 5 12 2194 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 6 13 2164
70 % 6 13 2154
50 % 136 308 21
40 % 400 929 5
30 % 448 1056 7
Entity #2 | Chains: H,I,J
B1-8 FV (HEAVY CHAIN) protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15854
95 % 3 3 14865 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 5 11 2902
70 % 25 85 257
50 % 248 576 7
40 % 401 929 5
30 % 449 1056 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.