Sequence Similarity Clusters for the Entities in PDB 1A6V

Entity #1 | Chains: L,M,N
B1-8 FV (LIGHT CHAIN) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16303
95 % 5 12 2257 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 6 13 2226
70 % 6 13 2226
50 % 136 309 23
40 % 407 948 5
30 % 455 1077 7
Entity #2 | Chains: H,I,J
B1-8 FV (HEAVY CHAIN) protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16250
95 % 3 3 15186 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 5 11 2970
70 % 25 85 267
50 % 255 594 7
40 % 408 948 5
30 % 456 1077 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures