Sequence Similarity Clusters for the Entities in PDB 1A6V

Entity #1 | Chains: L,M,N
B1-8 FV (LIGHT CHAIN) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15289
95 % 5 12 2100 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 6 13 2074
70 % 6 13 2077
50 % 133 296 22
40 % 378 866 5
30 % 425 992 7
Entity #2 | Chains: H,I,J
B1-8 FV (HEAVY CHAIN) protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15241
95 % 3 3 14306 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 5 11 2251
70 % 24 82 248
50 % 229 525 8
40 % 379 866 5
30 % 426 992 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.