Sequence Similarity Clusters for the Entities in PDB 1A6V

Entity #1 | Chains: L,M,N
B1-8 FV (LIGHT CHAIN) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15778
95 % 5 12 2179 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 6 13 2149
70 % 6 13 2141
50 % 135 305 21
40 % 395 916 5
30 % 442 1042 7
Entity #2 | Chains: H,I,J
B1-8 FV (HEAVY CHAIN) protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15726
95 % 3 3 14756 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 5 11 2872
70 % 24 82 259
50 % 244 566 7
40 % 396 916 5
30 % 443 1042 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.