Sequence Similarity Clusters for the Entities in PDB 1A6V

Entity #1 | Chains: L,M,N
B1-8 FV (LIGHT CHAIN) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16577
95 % 5 12 2295 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 6 13 2268
70 % 6 13 2264
50 % 136 315 23
40 % 408 963 5
30 % 456 1093 7
Entity #2 | Chains: H,I,J
B1-8 FV (HEAVY CHAIN) protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16525
95 % 3 3 15413 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 5 11 3010
70 % 25 86 269
50 % 256 603 7
40 % 409 963 5
30 % 457 1093 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures