Sequence Similarity Clusters for the Entities in PDB 1A6U

Entity #1 | Chains: L
B1-8 FV (LIGHT CHAIN) protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 16554
95 % 4 12 2293 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 5 13 2264
70 % 5 13 2259
50 % 120 312 23
40 % 353 956 5
30 % 399 1085 7
Entity #2 | Chains: H
B1-8 FV (HEAVY CHAIN) protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 16502
95 % 2 3 15394 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 4 11 3007
70 % 21 86 268
50 % 220 599 6
40 % 354 956 5
30 % 400 1085 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures