Sequence Similarity Clusters for the Entities in PDB 1A6T

Entity #1 | Chains: A,C
IGG1 FAB1-IA FAB (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42709
95 % 1 1 32418 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 40 148 144
70 % 1198 2479 1
50 % 2449 5021 1
40 % 2449 5021 1
30 % 2822 5951 1
Entity #2 | Chains: B,D
IGG1 FAB1-IA FAB (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42009
95 % 1 1 32030 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 30737
70 % 1187 2429 2
50 % 2450 5021 1
40 % 2450 5021 1
30 % 2823 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures