Sequence Similarity Clusters for the Entities in PDB 1A6A

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 74 232
95 % 68 81 297 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 79 97 238
70 % 79 97 272
50 % 120 149 180
40 % 120 149 196
30 % 249 310 98
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62274
95 % 4 4 10555
90 % 65 76 342
70 % 113 140 164
50 % 120 149 179
40 % 120 149 195
30 % 250 310 98
Entity #3 | Chains: C
HLA class II histocompatibility antigen, gamma chain protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.