Sequence Similarity Clusters for the Entities in PDB 1A6A

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 77 91 217
95 % 84 98 258 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 95 114 222
70 % 95 114 242
50 % 140 170 175
40 % 140 170 188
30 % 290 353 85
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66633
95 % 8 8 6690 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 82 94 287
70 % 140 169 151
50 % 141 171 174
40 % 141 171 187
30 % 291 353 85
Entity #3 | Chains: C
HLA class II histocompatibility antigen, gamma chain protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures