Sequence Similarity Clusters for the Entities in PDB 1A6A

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 69 82 221
95 % 76 89 280 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 87 105 231
70 % 87 105 264
50 % 132 161 179
40 % 132 161 194
30 % 273 334 89
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63524
95 % 4 4 10776
90 % 73 84 320
70 % 125 152 159
50 % 132 161 178
40 % 132 161 193
30 % 274 334 89
Entity #3 | Chains: C
HLA class II histocompatibility antigen, gamma chain protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures