Sequence Similarity Clusters for the Entities in PDB 1A5K

Entity #1 | Chains: A
UREASE (GAMMA SUBUNIT) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1629
95 % 23 31 2132 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 23 31 2224
70 % 40 48 1358
50 % 41 50 1143
40 % 41 50 1165
30 % 41 50 1226
Entity #2 | Chains: B
UREASE (BETA SUBUNIT) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1621
95 % 23 31 2153 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 23 31 2210
70 % 23 31 2273
50 % 23 31 2305
40 % 23 31 2325
30 % 23 31 2306
Entity #3 | Chains: C
UREASE (ALPHA SUBUNIT) protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 84064
95 % 23 31 2170 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 23 31 2205
70 % 23 31 2290
50 % 40 53 994
40 % 40 53 1023
30 % 40 53 1072

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5OL4 3 C Urease subunit alpha 1474 3.5.1.5 | Details
2 6H8J 3 C Urease subunit alpha 1474 3.5.1.5 | Details
3 4AC7 3 C UREASE SUBUNIT ALPHA 1474 3.5.1.5 | Details
4 5G4H 3 C UREASE SUBUNIT ALPHA 1474 3.5.1.5 | Details
5 4CEX 3 C UREASE SUBUNIT ALPHA 1474 3.5.1.5 | Details
6 4CEU 3 C UREASE SUBUNIT ALPHA 1474 3.5.1.5 | Details
7 4UBP 3 C PROTEIN (UREASE (CHAIN C)) 1474 3.5.1.5 | Details
8 5A6T 3 C UREASE SUBUNIT ALPHA 1474 3.5.1.5 | Details
9 4EP8 1 C Urease subunit alpha 548 3.5.1.5 | Details
10 1EJX 1 C UREASE ALPHA SUBUNIT 548 3.5.1.5 | Details
11 1UBP 3 C UREASE 1474 3.5.1.5 | Details
12 4EPD 1 C Urease subunit alpha 548 3.5.1.5 | Details
13 5FSD 3 C UREASE SUBUNIT ALPHA 1474 3.5.1.5 | Details
14 4EPB 1 C Urease subunit alpha 548 3.5.1.5 | Details
15 1EJW 1 C UREASE ALPHA SUBUNIT 548 3.5.1.5 | Details
16 6G48 3 C Urease subunit alpha 1474 3.5.1.5 | Details
17 1IE7 3 C UREASE ALPHA SUBUNIT 1474 3.5.1.5 | Details
18 3UBP 3 C PROTEIN (UREASE ALPHA SUBUNIT) 1474 3.5.1.5 | Details
19 2UBP 3 C PROTEIN (UREASE ALPHA SUBUNIT) 1474 3.5.1.5 | Details
20 1EJR 1 C UREASE ALPHA SUBUNIT 548 3.5.1.5 | Details
21 5FSE 3 C UREASE SUBUNIT ALPHA 1474 3.5.1.5 | Details
22 4EPE 1 C Urease subunit alpha 548 3.5.1.5 | Details
23 1FWC 3 C UREASE PH 8.5 548 3.5.1.5 | Details
24 1FWA 3 C UREASE PH 7.5 548 3.5.1.5 | Details
25 1FWB 3 C UREASE PH 6.5 548 3.5.1.5 | Details
26 1FWD 3 C UREASE PH 9.4 548 3.5.1.5 | Details
27 1FWI 3 C UREASE 548 3.5.1.5 | Details
28 1FWF 3 C UREASE 548 3.5.1.5 | Details
29 1EJT 1 C UREASE ALPHA SUBUNIT 548 3.5.1.5 | Details
30 1FWG 3 C UREASE 548 3.5.1.5 | Details
31 1FWH 3 C UREASE 548 3.5.1.5 | Details
32 1EJS 1 C UREASE ALPHA SUBUNIT 548 3.5.1.5 | Details
33 2KAU 3 C UREASE (ALPHA CHAIN) 548 3.5.1.5 | Details
34 1EJU 1 C UREASE ALPHA SUBUNIT 548 3.5.1.5 | Details
35 1A5M 3 C UREASE (ALPHA SUBUNIT) 548 3.5.1.5 | Details
36 1S3T 3 C Urease alpha subunit 1474 3.5.1.5 | Details
37 1FWE 3 C UREASE INHIBITOR BOUND 548 3.5.1.5 | Details
38 6I9Y 3 C Urease subunit alpha 1474 3.5.1.5 | Details
39 1FWJ 3 C UREASE 548 3.5.1.5 | Details
40 1A5K 3 C UREASE (ALPHA SUBUNIT) 548 3.5.1.5 | Details
41 1A5L 3 C UREASE (ALPHA SUBUNIT) 548 3.5.1.5 | Details
42 1A5N 3 C UREASE (ALPHA SUBUNIT) 548 3.5.1.5 | Details
43 1KRA 3 C UREASE 548 3.5.1.5 | Details
44 1EJV 1 C UREASE ALPHA SUBUNIT 548 3.5.1.5 | Details
45 1EF2 1 A UREASE ALPHA SUBUNIT 548 3.5.1.5 | Details
46 1KRB 3 C UREASE 548 3.5.1.5 | Details
47 1KRC 3 C UREASE 548 3.5.1.5 | Details
48 1A5O 3 C UREASE (ALPHA SUBUNIT) 548 3.5.1.5 | Details
49 3QGA 2 C, F, I, L, O, R Urease subunit beta 2 217 3.5.1.5 | Details
50 3QGK 2 C, F, I, L, O, R Urease subunit beta 2 217 3.5.1.5 | Details
51 1E9Z 2 B UREASE SUBUNIT BETA 210 3.5.1.5 | Details
52 1E9Y 2 B UREASE SUBUNIT BETA 210 3.5.1.5 | Details
53 4Z42 3 C, F, I, L Urease subunit alpha 630 3.5.1.5 | Details