Sequence Similarity Clusters for the Entities in PDB 1A5K

Entity #1 | Chains: A
UREASE (GAMMA SUBUNIT) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1608
95 % 23 31 2104 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 23 31 2174
70 % 40 48 1384
50 % 41 50 1135
40 % 41 50 1170
30 % 41 50 1219
Entity #2 | Chains: B
UREASE (BETA SUBUNIT) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1604
95 % 23 31 2127 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 23 31 2180
70 % 23 31 2247
50 % 23 31 2276
40 % 23 31 2301
30 % 23 31 2282
Entity #3 | Chains: C
UREASE (ALPHA SUBUNIT) protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 83721
95 % 23 31 2113 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 23 31 2170
70 % 23 31 2239
50 % 40 53 992
40 % 40 53 1031
30 % 40 53 1059

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4EP8 3 A Urease subunit gamma 548 3.5.1.5 | Details
2 1EJX 3 A UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
3 4EPD 3 A Urease subunit gamma 548 3.5.1.5 | Details
4 4EPB 3 A Urease subunit gamma 548 3.5.1.5 | Details
5 1EJW 3 A UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
6 1EJR 3 A UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
7 4EPE 3 A Urease subunit gamma 548 3.5.1.5 | Details
8 1FWC 1 A UREASE PH 8.5 548 3.5.1.5 | Details
9 1FWA 1 A UREASE PH 7.5 548 3.5.1.5 | Details
10 1FWB 1 A UREASE PH 6.5 548 3.5.1.5 | Details
11 1FWD 1 A UREASE PH 9.4 548 3.5.1.5 | Details
12 1FWI 1 A UREASE 548 3.5.1.5 | Details
13 1FWF 1 A UREASE 548 3.5.1.5 | Details
14 1EJT 3 A UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
15 1FWG 1 A UREASE 548 3.5.1.5 | Details
16 1FWH 1 A UREASE 548 3.5.1.5 | Details
17 1EJS 3 A UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
18 2KAU 1 A UREASE (GAMMA CHAIN) 548 3.5.1.5 | Details
19 1EJU 3 A UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
20 1A5M 1 A UREASE (GAMMA SUBUNIT) 548 3.5.1.5 | Details
21 1FWE 1 A UREASE INHIBITOR BOUND 548 3.5.1.5 | Details
22 1FWJ 1 A UREASE 548 3.5.1.5 | Details
23 1A5K 1 A UREASE (GAMMA SUBUNIT) 548 3.5.1.5 | Details
24 1A5L 1 A UREASE (GAMMA SUBUNIT) 548 3.5.1.5 | Details
25 1A5N 1 A UREASE (GAMMA SUBUNIT) 548 3.5.1.5 | Details
26 1KRA 1 A UREASE 548 3.5.1.5 | Details
27 1EJV 3 A UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
28 1EF2 3 C UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
29 1KRB 1 A UREASE 548 3.5.1.5 | Details
30 1KRC 1 A UREASE 548 3.5.1.5 | Details
31 1A5O 1 A UREASE (GAMMA SUBUNIT) 548 3.5.1.5 | Details