Sequence Similarity Clusters for the Entities in PDB 1A5K

Entity #1 | Chains: A
UREASE (GAMMA SUBUNIT) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1608
95 % 23 31 2104 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 23 31 2174
70 % 40 48 1384
50 % 41 50 1135
40 % 41 50 1170
30 % 41 50 1219
Entity #2 | Chains: B
UREASE (BETA SUBUNIT) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1604
95 % 23 31 2127 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 23 31 2180
70 % 23 31 2247
50 % 23 31 2276
40 % 23 31 2301
30 % 23 31 2282
Entity #3 | Chains: C
UREASE (ALPHA SUBUNIT) protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 83721
95 % 23 31 2113 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 23 31 2170
70 % 23 31 2239
50 % 40 53 992
40 % 40 53 1031
30 % 40 53 1059

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5OL4 1 A Urease subunit gamma 1474 3.5.1.5 | Details
2 6H8J 1 A Urease subunit gamma 1474 3.5.1.5 | Details
3 4AC7 1 A UREASE SUBUNIT GAMMA 1474 3.5.1.5 | Details
4 5G4H 1 A UREASE SUBUNIT GAMMA 1474 3.5.1.5 | Details
5 4CEX 1 A UREASE SUBUNIT GAMMA 1474 3.5.1.5 | Details
6 4CEU 1 A UREASE SUBUNIT GAMMA 1474 3.5.1.5 | Details
7 4UBP 1 A PROTEIN (UREASE (CHAIN A)) 1474 3.5.1.5 | Details
8 5A6T 1 A UREASE SUBUNIT GAMMA 1474 3.5.1.5 | Details
9 4EP8 3 A Urease subunit gamma 548 3.5.1.5 | Details
10 1EJX 3 A UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
11 1UBP 1 A UREASE 1474 3.5.1.5 | Details
12 4EPD 3 A Urease subunit gamma 548 3.5.1.5 | Details
13 5FSD 1 A UREASE SUBUNIT GAMMA 1474 3.5.1.5 | Details
14 4EPB 3 A Urease subunit gamma 548 3.5.1.5 | Details
15 1EJW 3 A UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
16 6G48 1 A Urease subunit gamma 1474 3.5.1.5 | Details
17 1IE7 1 A UREASE GAMMA SUBUNIT 1474 3.5.1.5 | Details
18 3UBP 1 A PROTEIN (UREASE GAMMA SUBUNIT) 1474 3.5.1.5 | Details
19 2UBP 1 A PROTEIN (UREASE GAMMA SUBUNIT) 1474 3.5.1.5 | Details
20 1EJR 3 A UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
21 5FSE 1 A UREASE SUBUNIT GAMMA 1474 3.5.1.5 | Details
22 4EPE 3 A Urease subunit gamma 548 3.5.1.5 | Details
23 1FWC 1 A UREASE PH 8.5 548 3.5.1.5 | Details
24 1FWA 1 A UREASE PH 7.5 548 3.5.1.5 | Details
25 1FWB 1 A UREASE PH 6.5 548 3.5.1.5 | Details
26 1FWD 1 A UREASE PH 9.4 548 3.5.1.5 | Details
27 1FWI 1 A UREASE 548 3.5.1.5 | Details
28 1FWF 1 A UREASE 548 3.5.1.5 | Details
29 1EJT 3 A UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
30 1FWG 1 A UREASE 548 3.5.1.5 | Details
31 4FUR 1 A, B, C, D, E, F Urease subunit gamma 2 235 3.5.1.5 | Details
32 1FWH 1 A UREASE 548 3.5.1.5 | Details
33 1EJS 3 A UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
34 2KAU 1 A UREASE (GAMMA CHAIN) 548 3.5.1.5 | Details
35 1EJU 3 A UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
36 1A5M 1 A UREASE (GAMMA SUBUNIT) 548 3.5.1.5 | Details
37 1S3T 1 A Urease gamma subunit 1474 3.5.1.5 | Details
38 1FWE 1 A UREASE INHIBITOR BOUND 548 3.5.1.5 | Details
39 6I9Y 1 A Urease subunit gamma 1474 3.5.1.5 | Details
40 1FWJ 1 A UREASE 548 3.5.1.5 | Details
41 1A5K 1 A UREASE (GAMMA SUBUNIT) 548 3.5.1.5 | Details
42 1A5L 1 A UREASE (GAMMA SUBUNIT) 548 3.5.1.5 | Details
43 1A5N 1 A UREASE (GAMMA SUBUNIT) 548 3.5.1.5 | Details
44 1KRA 1 A UREASE 548 3.5.1.5 | Details
45 1EJV 3 A UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
46 1EF2 3 C UREASE GAMMA SUBUNIT 548 3.5.1.5 | Details
47 1KRB 1 A UREASE 548 3.5.1.5 | Details
48 1KRC 1 A UREASE 548 3.5.1.5 | Details
49 1A5O 1 A UREASE (GAMMA SUBUNIT) 548 3.5.1.5 | Details
50 4Z42 1 A, D, G, J Urease subunit gamma 630 3.5.1.5 | Details