Sequence Similarity Clusters for the Entities in PDB 1A5K

Entity #1 | Chains: A
UREASE (GAMMA SUBUNIT) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1742
95 % 23 31 2034 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 23 31 2084
70 % 38 46 1364
50 % 39 48 1146
40 % 39 48 1149
30 % 39 48 1127
Entity #2 | Chains: B
UREASE (BETA SUBUNIT) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1747
95 % 23 31 2032 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 23 31 2083
70 % 23 31 2113
50 % 23 31 2156
40 % 23 31 2128
30 % 23 31 2016
Entity #3 | Chains: C
UREASE (ALPHA SUBUNIT) protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 8015
95 % 23 31 2066 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 23 31 2118
70 % 23 31 2143
50 % 38 51 1003
40 % 38 51 1025
30 % 38 51 1004

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures