Sequence Similarity Clusters for the Entities in PDB 1A5K

Entity #1 | Chains: A
UREASE (GAMMA SUBUNIT) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1673
95 % 23 31 1968 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 23 31 2006
70 % 37 45 1323
50 % 38 47 1119
40 % 38 47 1126
30 % 38 47 1110
Entity #2 | Chains: B
UREASE (BETA SUBUNIT) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1677
95 % 23 31 1966 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 23 31 2005
70 % 23 31 2031
50 % 23 31 2094
40 % 23 31 2068
30 % 23 31 1964
Entity #3 | Chains: C
UREASE (ALPHA SUBUNIT) protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 7759
95 % 23 31 1997 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 23 31 2037
70 % 23 31 2060
50 % 37 50 978
40 % 37 50 1002
30 % 37 50 989

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures