Sequence Similarity Clusters for the Entities in PDB 1A5K

Entity #1 | Chains: A
UREASE (GAMMA SUBUNIT) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1756
95 % 23 31 2059 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 23 31 2108
70 % 38 46 1376
50 % 39 48 1151
40 % 39 48 1155
30 % 39 48 1140
Entity #2 | Chains: B
UREASE (BETA SUBUNIT) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1763
95 % 23 31 2056 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 23 31 2106
70 % 23 31 2132
50 % 23 31 2173
40 % 23 31 2143
30 % 23 31 2030
Entity #3 | Chains: C
UREASE (ALPHA SUBUNIT) protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 8104
95 % 23 31 2095 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 23 31 2141
70 % 23 31 2162
50 % 38 51 1011
40 % 38 51 1028
30 % 38 51 1010

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures