Sequence Similarity Clusters for the Entities in PDB 1A5K

Entity #1 | Chains: A
UREASE (GAMMA SUBUNIT) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1619
95 % 23 31 1908 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 23 31 1947
70 % 37 45 1287
50 % 38 47 1094
40 % 38 47 1104
30 % 38 47 1091
Entity #2 | Chains: B
UREASE (BETA SUBUNIT) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1623
95 % 23 31 1906 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 23 31 1946
70 % 23 31 1969
50 % 23 31 2036
40 % 23 31 2006
30 % 23 31 1913
Entity #3 | Chains: C
UREASE (ALPHA SUBUNIT) protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 7549
95 % 23 31 1939 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 23 31 1978
70 % 23 31 1998
50 % 37 50 953
40 % 37 50 974
30 % 37 50 962

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures