Sequence Similarity Clusters for the Entities in PDB 1A5F

Entity #1 | Chains: L
MONOCLONAL ANTI-E-SELECTIN 7A9 ANTIBODY (LIGHT CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 25105
95 % 8 13 4011 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 65 91 269
70 % 1541 2519 1
50 % 3134 5107 1
40 % 3568 5756 1
30 % 4418 7175 1
Entity #2 | Chains: H
MONOCLONAL ANTI-E-SELECTIN 7A9 ANTIBODY (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52078
95 % 1 1 42960
90 % 1 1 40897
70 % 1515 2478 2
50 % 3135 5107 1
40 % 3569 5756 1
30 % 4419 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures