Sequence Similarity Clusters for the Entities in PDB 1A5F

Entity #1 | Chains: L
MONOCLONAL ANTI-E-SELECTIN 7A9 ANTIBODY (LIGHT CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 25380
95 % 8 13 4067 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 65 91 270
70 % 1574 2576 1
50 % 3207 5226 1
40 % 3650 5890 1
30 % 4512 7330 1
Entity #2 | Chains: H
MONOCLONAL ANTI-E-SELECTIN 7A9 ANTIBODY (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52695
95 % 1 1 43431
90 % 1 1 41337
70 % 1548 2532 2
50 % 3208 5226 1
40 % 3651 5890 1
30 % 4513 7330 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures