Sequence Similarity Clusters for the Entities in PDB 1A5F

Entity #1 | Chains: L
MONOCLONAL ANTI-E-SELECTIN 7A9 ANTIBODY (LIGHT CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60300
95 % 8 13 3771 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 59 83 311
70 % 1447 2362 1
50 % 2938 4781 1
40 % 2938 4781 1
30 % 3409 5635 1
Entity #2 | Chains: H
MONOCLONAL ANTI-E-SELECTIN 7A9 ANTIBODY (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60627
95 % 1 1 42573
90 % 1 1 40528
70 % 1417 2311 2
50 % 2939 4781 1
40 % 2939 4781 1
30 % 3410 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures