Sequence Similarity Clusters for the Entities in PDB 1A4J

Entity #1 | Chains: A,L
IMMUNOGLOBULIN, DIELS ALDER CATALYTIC ANTIBODY (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39423
95 % 7 23 1545 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.1
PDBFlex
90 % 43 96 282
70 % 791 2236 2
50 % 999 2821 2
40 % 999 2821 2
30 % 2037 5715 1
Entity #2 | Chains: B,H
IMMUNOGLOBULIN, DIELS ALDER CATALYTIC ANTIBODY (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21838
95 % 1 2 19628 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.6
PDBFlex
90 % 2 8 7256
70 % 971 2735 1
50 % 1026 2852 1
40 % 1026 2852 1
30 % 2038 5715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures