Sequence Similarity Clusters for the Entities in PDB 1A4J

Entity #1 | Chains: A,L
IMMUNOGLOBULIN, DIELS ALDER CATALYTIC ANTIBODY (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35996
95 % 7 24 1462 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.1
PDBFlex
90 % 312 865 2
70 % 969 2765 1
50 % 1999 5625 1
40 % 2309 6382 1
30 % 2791 7934 1
Entity #2 | Chains: B,H
IMMUNOGLOBULIN, DIELS ALDER CATALYTIC ANTIBODY (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26108
95 % 1 2 19210 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 2.6
PDBFlex
90 % 2 8 7131
70 % 964 2728 2
50 % 2000 5625 1
40 % 2310 6382 1
30 % 2792 7934 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures