Sequence Similarity Clusters for the Entities in PDB 1A3R

Entity #1 | Chains: L
IGG2A 8F5 FAB (LIGHT CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40447
95 % 2 13 3771 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 27 83 311
70 % 516 2362 1
50 % 1066 4781 1
40 % 1066 4781 1
30 % 1172 5635 1
Entity #2 | Chains: H
IGG2A 8F5 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40664
95 % 1 2 31089 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 3.0
PDBFlex
90 % 1 30 1160
70 % 516 2311 2
50 % 1067 4781 1
40 % 1067 4781 1
30 % 1173 5635 1
Entity #3 | Chains: P
HUMAN RHINOVIRUS CAPSID PROTEIN VP2 protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures