Sequence Similarity Clusters for the Entities in PDB 1A3R

Entity #1 | Chains: L
IGG2A 8F5 FAB (LIGHT CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41131
95 % 2 13 3844 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 27 84 306
70 % 540 2426 1
50 % 1114 4913 1
40 % 1114 4913 1
30 % 1225 5780 1
Entity #2 | Chains: H
IGG2A 8F5 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41352
95 % 1 2 31554 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 3.0
PDBFlex
90 % 1 30 1182
70 % 540 2376 2
50 % 1115 4913 1
40 % 1115 4913 1
30 % 1226 5780 1
Entity #3 | Chains: P
HUMAN RHINOVIRUS CAPSID PROTEIN VP2 protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures