Sequence Similarity Clusters for the Entities in PDB 1A3Q

Entity #1 | Chains: C
DNA (5'-D(*GP*GP*GP*GP*AP*AP*TP*CP*CP*CP*C)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*GP*GP*GP*GP*AP*TP*TP*CP*CP*CP*C)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
PROTEIN (NUCLEAR FACTOR KAPPA-B P52) protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36019
95 % 1 2 21623 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.6
PDBFlex
90 % 1 2 21016
70 % 1 2 19357
50 % 1 12 2954
40 % 1 25 1319
30 % 1 25 1304

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.