Sequence Similarity Clusters for the Entities in PDB 1A3L

Entity #1 | Chains: L
IMMUNOGLOBULIN FAB 13G5 (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28280
95 % 2 3 23547 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 13 33 985
70 % 403 2416 1
50 % 824 4892 1
40 % 824 4892 1
30 % 896 5759 1
Entity #2 | Chains: H
IMMUNOGLOBULIN FAB 13G5 (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 28256
95 % 2 3 23527
90 % 2 3 22772
70 % 402 2366 2
50 % 825 4892 1
40 % 825 4892 1
30 % 897 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures