Sequence Similarity Clusters for the Entities in PDB 1A38

Entity #1 | Chains: A,B
14-3-3 PROTEIN ZETA protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 38 399
95 % 38 39 496 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 38 39 531
70 % 156 158 134
50 % 160 162 151
40 % 160 162 165
30 % 161 163 175
Entity #2 | Chains: P,Q
R18 PEPTIDE (PHCVPRDLSWLDLEANMCLP) protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40266
95 % 1 1 33957
90 % 1 1 32481
70 % 1 1 28995
50 % 1 1 24789
40 % 1 1 21785
30 % 1 1 18176

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures