Sequence Similarity Clusters for the Entities in PDB 1A2Y

Entity #1 | Chains: A
IGG1-KAPPA D1.3 FV (LIGHT CHAIN) protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 13905
95 % 1 17 3803 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 1 21 3023
70 % 7 191 72
50 % 17 308 21
40 % 65 929 5
30 % 75 1056 7
Entity #2 | Chains: B
IGG1-KAPPA D1.3 FV (HEAVY CHAIN) protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 5834
95 % 1 17 3799 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 1 17 3846
70 % 1 36 1250
50 % 47 576 7
40 % 66 929 5
30 % 76 1056 7
Entity #3 | Chains: C
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66695
95 % 182 713 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 186 730 5
70 % 204 950 7
50 % 204 958 8
40 % 206 992 11
30 % 206 992 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.