Sequence Similarity Clusters for the Entities in PDB 1A2K

Entity #1 | Chains: A,B
NUCLEAR TRANSPORT FACTOR 2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 4711
95 % 11 12 2401 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 11 12 2474
70 % 11 12 2471
50 % 11 12 2447
40 % 14 15 1629
30 % 18 25 1164
Entity #2 | Chains: C,D,E
RAN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 55 505
95 % 50 74 333 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.8
PDBFlex
90 % 52 78 337
70 % 54 81 371
50 % 54 81 436
40 % 55 82 460
30 % 579 834 13

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures