Sequence Similarity Clusters for the Entities in PDB 1A2K

Entity #1 | Chains: A,B
NUCLEAR TRANSPORT FACTOR 2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9660
95 % 11 12 2296 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 11 12 2362
70 % 11 12 2359
50 % 11 12 2340
40 % 14 15 1633
30 % 18 25 1111
Entity #2 | Chains: C,D,E
RAN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 51 502
95 % 50 74 323 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.8
PDBFlex
90 % 52 78 321
70 % 54 81 358
50 % 54 81 416
40 % 55 82 437
30 % 548 797 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures