Sequence Similarity Clusters for the Entities in PDB 1A2K

Entity #1 | Chains: A,B
NUCLEAR TRANSPORT FACTOR 2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9528
95 % 11 12 2262 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 11 12 2325
70 % 11 12 2319
50 % 11 12 2303
40 % 14 15 1612
30 % 18 25 1091
Entity #2 | Chains: C,D,E
RAN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 51 491
95 % 50 74 310 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.9
PDBFlex
90 % 52 78 311
70 % 54 81 345
50 % 54 81 402
40 % 55 82 420
30 % 529 775 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.