Sequence Similarity Clusters for the Entities in PDB 1A1V

Entity #1 | Chains: B
DNA (5'-D(*UP*UP*UP*UP*UP*UP*UP*U)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (NS3 PROTEIN) protein, length: 476 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61229
95 % 4 8 4998 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.5
PDBFlex
90 % 8 19 1664
70 % 8 19 1687
50 % 8 19 1727
40 % 8 19 1716
30 % 8 19 1681

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1HEI 1 A, B HCV HELICASE 11103
2 4OK5 1 A, B Serine protease NS3 UNP residues 1206-1656 11103
3 4OKS 1 A, B Serine protease NS3 UNP residues 1206-1656 11103
4 1A1V 2 A PROTEIN (NS3 PROTEIN) HELICASE DOMAIN 11103
5 4OJQ 1 A, B Serine protease NS3 UNP residues 1206-1656 11103
6 4OK3 1 A, B Serine protease NS3 UNP residues 1206-1656 11103
7 4OK6 1 A, B Serine protease NS3 UNP residues 1206-1656 11103
8 4WXR 1 A, B NS3 UNP residues 180-630 11103