Sequence Similarity Clusters for the Entities in PDB 1A1V

Entity #1 | Chains: B
DNA (5'-D(*UP*UP*UP*UP*UP*UP*UP*U)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (NS3 PROTEIN) protein, length: 476 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61229
95 % 4 8 4998 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.5
PDBFlex
90 % 8 19 1664
70 % 8 19 1687
50 % 8 19 1727
40 % 8 19 1716
30 % 8 19 1681

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4WXP 1 A NS3-4 protease UNP residues 180-630 11103
2 3KQN 1 A Serine protease/NTPase/helicase NS3 11103 3.4.21.98 | Details 3.6.1 | Details 3.6.1.15 | Details
3 5E4F 1 A, B Serine protease NS3 UNP residues 1215-1651 11103 3.4.21.98 | Details 3.6.1.15 | Details 3.6.4.13 | Details
4 1HEI 1 A, B HCV HELICASE 11103
5 4OK5 1 A, B Serine protease NS3 UNP residues 1206-1656 11103
6 4OKS 1 A, B Serine protease NS3 UNP residues 1206-1656 11103
7 3RVB 1 A RNA helicase UNP residues 1186-1658 11103 3.6.4.13 | Details
8 1A1V 2 A PROTEIN (NS3 PROTEIN) HELICASE DOMAIN 11103
9 4OJQ 1 A, B Serine protease NS3 UNP residues 1206-1656 11103
10 3KQU 1 A, B, C, D, E, F Serine protease/NTPase/helicase NS3 11103 3.4.21.98 | Details 3.6.1 | Details 3.6.1.15 | Details
11 3KQL 1 A, B Serine protease/NTPase/helicase NS3 11103 3.4.21.98 | Details 3.6.1 | Details 3.6.1.15 | Details
12 8OHM 1 A RNA HELICASE 11103
13 4OK3 1 A, B Serine protease NS3 UNP residues 1206-1656 11103
14 3KQH 1 A, B Serine protease/NTPase/helicase NS3 11103 3.4.21.98 | Details 3.6.1 | Details 3.6.1.15 | Details
15 4OK6 1 A, B Serine protease NS3 UNP residues 1206-1656 11103
16 4WXR 1 A, B NS3 UNP residues 180-630 11103
17 2ZJO 1 A Genome polyprotein NS3 HELICASE 11103 3.4.21.98 | Details
18 3KQK 1 A, B Serine protease/NTPase/helicase NS3 11103 3.4.21.98 | Details 3.6.1 | Details 3.6.1.15 | Details
19 2F55 3 A, B, C polyprotein NS3 helicase 11103 3.6.1 | Details