Sequence Similarity Clusters for the Entities in PDB 1A1V

Entity #1 | Chains: B
DNA (5'-D(*UP*UP*UP*UP*UP*UP*UP*U)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (NS3 PROTEIN) protein, length: 476 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58610
95 % 4 8 4714 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.5
PDBFlex
90 % 8 19 1544
70 % 8 19 1569
50 % 8 19 1622
40 % 8 19 1611
30 % 8 19 1594

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures