Sequence Similarity Clusters for the Entities in PDB 1A1V

Entity #1 | Chains: B
DNA (5'-D(*UP*UP*UP*UP*UP*UP*UP*U)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (NS3 PROTEIN) protein, length: 476 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52628
95 % 4 8 4379
90 % 8 19 1484
70 % 8 19 1480
50 % 8 19 1529
40 % 8 19 1546
30 % 8 19 1521

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures