Sequence Similarity Clusters for the Entities in PDB 1A1T

Entity #1 | Chains: B
SL3 STEM-LOOP RNA rna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
NUCLEOCAPSID PROTEIN protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 26970
95 % 4 4 18828
90 % 5 6 11972
70 % 5 6 11263
50 % 5 6 10107
40 % 5 6 9190
30 % 5 6 8042

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.