Sequence Similarity Clusters for the Entities in PDB 1A1T

Entity #1 | Chains: B
SL3 STEM-LOOP RNA rna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
NUCLEOCAPSID PROTEIN protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 24217
95 % 4 4 21644
90 % 5 6 14013
70 % 5 6 13110
50 % 5 6 11622
40 % 5 6 10480
30 % 5 6 8925

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures