Sequence Similarity Clusters for the Entities in PDB 1A1T

Entity #1 | Chains: B
SL3 STEM-LOOP RNA rna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
NUCLEOCAPSID PROTEIN protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 23943
95 % 4 4 21414
90 % 5 6 13859
70 % 5 6 12983
50 % 5 6 11513
40 % 5 6 10390
30 % 5 6 8844

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures