Sequence Similarity Clusters for the Entities in PDB 1A1O

Entity #1 | Chains: A
HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 38653
95 % 101 138 225 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 145 204 136
70 % 359 732 6
50 % 360 737 7
40 % 383 788 10
30 % 412 919 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 333 632 2
95 % 360 676 3
90 % 363 685 4
70 % 432 936 4
50 % 440 958 3
40 % 440 958 7
30 % 440 958 12
Entity #3 | Chains: C
PEPTIDE LS6 (KPIVQYDNF) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures