Sequence Similarity Clusters for the Entities in PDB 1A1O

Entity #1 | Chains: A
HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 37381
95 % 98 134 226 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 142 200 135
70 % 352 716 6
50 % 353 721 6
40 % 376 772 10
30 % 405 896 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 327 616 2
95 % 354 660 3
90 % 357 669 4
70 % 426 912 4
50 % 434 934 3
40 % 434 934 7
30 % 434 934 12
Entity #3 | Chains: C
PEPTIDE LS6 (KPIVQYDNF) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.