Sequence Similarity Clusters for the Entities in PDB 1A1O

Entity #1 | Chains: A
HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 38189
95 % 99 135 230 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 143 201 138
70 % 357 727 6
50 % 358 732 6
40 % 381 783 10
30 % 410 909 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 330 624 2
95 % 357 668 3
90 % 360 677 4
70 % 429 924 4
50 % 437 946 3
40 % 437 946 7
30 % 437 946 12
Entity #3 | Chains: C
PEPTIDE LS6 (KPIVQYDNF) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures