Sequence Similarity Clusters for the Entities in PDB 1A1N

Entity #1 | Chains: A
HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 26 1648
95 % 92 143 226 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 130 209 137
70 % 305 746 6
50 % 309 760 7
40 % 322 812 9
30 % 351 939 13
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 303 675 2
95 % 312 690 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 314 699 4
70 % 369 953 4
50 % 374 975 3
40 % 374 975 6
30 % 374 975 9
Entity #3 | Chains: C
PEPTIDE VPLRPMTY protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures