Sequence Similarity Clusters for the Entities in PDB 1A1M

Entity #1 | Chains: A
HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 43275
95 % 109 138 230 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 160 204 137
70 % 434 740 6
50 % 443 754 7
40 % 467 806 9
30 % 505 930 12
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 406 666 2
95 % 415 681 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 418 690 4
70 % 521 944 4
50 % 533 966 3
40 % 533 966 6
30 % 533 966 9
Entity #3 | Chains: C
PEPTIDE TPYDINQML protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures