Sequence Similarity Clusters for the Entities in PDB 1A1M

Entity #1 | Chains: A
HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37558
95 % 107 135 226 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 158 201 135
70 % 420 719 6
50 % 421 724 6
40 % 451 775 10
30 % 489 899 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 376 618 2
95 % 405 662 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 408 671 4
70 % 508 916 4
50 % 520 938 3
40 % 520 938 7
30 % 520 938 12
Entity #3 | Chains: C
PEPTIDE TPYDINQML protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures