Sequence Similarity Clusters for the Entities in PDB 1A1L

Entity #1 | Chains: B
DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (ZIF268 ZINC FINGER PEPTIDE) protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 10 7534
95 % 15 16 3952 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 15 16 4002
70 % 16 18 3090
50 % 26 34 1486
40 % 30 184 283
30 % 56 315 158

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures