Sequence Similarity Clusters for the Entities in PDB 1A14

Entity #1 | Chains: N
NEURAMINIDASE protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 39 1162
95 % 40 48 1013 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 55 63 780
70 % 55 63 830
50 % 124 153 188
40 % 124 153 205
30 % 142 176 162
Entity #2 | Chains: H
NC10 FV (HEAVY CHAIN) protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 16212
95 % 2 4 15055 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 4 14753
70 % 39 87 260
50 % 348 609 6
40 % 2850 5750 1
30 % 3493 7168 1
Entity #3 | Chains: L
NC10 FV (LIGHT CHAIN) protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25240
95 % 2 4 14289 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 5 8 6629
70 % 126 215 58
50 % 183 317 23
40 % 207 361 26
30 % 3494 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures