Sequence Similarity Clusters for the Entities in PDB 1A0R

Entity #1 | Chains: B
TRANSDUCIN (BETA SUBUNIT) protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 14869
95 % 23 35 1361 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 23 35 1387
70 % 23 35 1406
50 % 24 36 1382
40 % 24 38 1331
30 % 24 38 1307
Entity #2 | Chains: G
TRANSDUCIN (GAMMA SUBUNIT) protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 7545
95 % 4 6 8116
90 % 4 6 8066
70 % 4 6 7798
50 % 4 6 7187
40 % 4 6 6679
30 % 4 6 5954
Entity #3 | Chains: P
PHOSDUCIN protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58866
95 % 1 1 41630
90 % 1 1 39743
70 % 1 3 20336
50 % 1 3 17613
40 % 1 3 15709
30 % 1 3 13432

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures