Sequence Similarity Clusters for the Entities in PDB 1A0R

Entity #1 | Chains: B
TRANSDUCIN (BETA SUBUNIT) protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 14669
95 % 23 35 1345 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 23 35 1371
70 % 23 35 1388
50 % 24 36 1364
40 % 24 38 1314
30 % 24 38 1293
Entity #2 | Chains: G
TRANSDUCIN (GAMMA SUBUNIT) protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 7437
95 % 4 6 8009
90 % 4 6 7967
70 % 4 6 7714
50 % 4 6 7101
40 % 4 6 6599
30 % 4 6 5885
Entity #3 | Chains: P
PHOSDUCIN protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58134
95 % 1 1 41098
90 % 1 1 39263
70 % 1 3 20120
50 % 1 3 17436
40 % 1 3 15554
30 % 1 3 13298

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.