Sequence Similarity Clusters for the Entities in PDB 1A0R

Entity #1 | Chains: B
TRANSDUCIN (BETA SUBUNIT) protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 14440
95 % 23 35 1330 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 23 35 1355
70 % 23 35 1371
50 % 24 36 1351
40 % 24 38 1300
30 % 24 38 1278
Entity #2 | Chains: G
TRANSDUCIN (GAMMA SUBUNIT) protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 7339
95 % 4 6 7890
90 % 4 6 7849
70 % 4 6 7563
50 % 4 6 6970
40 % 4 6 6484
30 % 4 6 5781
Entity #3 | Chains: P
PHOSDUCIN protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57308
95 % 1 1 40501
90 % 1 1 38709
70 % 1 3 19805
50 % 1 3 17185
40 % 1 3 15335
30 % 1 3 13111

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.