Sequence Similarity Clusters for the Entities in PDB 1A02

Entity #1 | Chains: A
DNA (5'-D(*DTP*DTP*DGP*DGP*DAP*DAP*DAP*DAP*DTP*DTP*DTP*DGP*DTP*DTP*DTP*DCP*DAP*DTP*DAP*DG)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA (5'-D(*DAP*DAP*DCP*DTP*DAP*DTP*DGP*DAP*DAP*DAP*DCP*DAP*DAP*DAP*DTP*DTP*DTP*DTP*DCP*DC)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: N
NUCLEAR FACTOR OF ACTIVATED T CELLS protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 2247
95 % 3 8 2633 Flexibility: Medium
Max RMSD: 16.6, Avg RMSD: 9.8
PDBFlex
90 % 3 8 2677
70 % 3 8 2659
50 % 3 8 2631
40 % 3 9 2324
30 % 3 9 2226
Entity #4 | Chains: F
AP-1 FRAGMENT FOS protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 72466
95 % 1 2 36192 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 34580
70 % 1 2 30772
50 % 1 2 26312
40 % 1 2 23238
30 % 1 2 19727
Entity #5 | Chains: J
AP-1 FRAGMENT JUN protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 6784
95 % 4 7 6470 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 4 7 6450
70 % 8 13 2858
50 % 8 13 2817
40 % 9 17 1713
30 % 14 25 1167

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.