Sequence Similarity Clusters for the Entities in PDB 1A02

Entity #1 | Chains: A
DNA (5'-D(*DTP*DTP*DGP*DGP*DAP*DAP*DAP*DAP*DTP*DTP*DTP*DGP*DTP*DTP*DTP*DCP*DAP*DTP*DAP*DG)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA (5'-D(*DAP*DAP*DCP*DTP*DAP*DTP*DGP*DAP*DAP*DAP*DCP*DAP*DAP*DAP*DTP*DTP*DTP*DTP*DCP*DC)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: N
NUCLEAR FACTOR OF ACTIVATED T CELLS protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 2486
95 % 3 8 2775 Flexibility: Medium
Max RMSD: 16.6, Avg RMSD: 9.8
PDBFlex
90 % 3 8 2836
70 % 3 8 2804
50 % 3 8 2774
40 % 3 9 2446
30 % 3 9 2291
Entity #4 | Chains: F
AP-1 FRAGMENT FOS protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61766
95 % 1 2 28545 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 27433
70 % 1 2 24737
50 % 1 2 21223
40 % 1 2 18730
30 % 1 2 15679
Entity #5 | Chains: J
AP-1 FRAGMENT JUN protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 7332
95 % 4 7 6714 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 4 7 6699
70 % 8 13 2964
50 % 8 13 2924
40 % 8 13 2843
30 % 8 13 2630

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures