Sequence Similarity Clusters for the Entities in PDB 1A02

Entity #1 | Chains: A
DNA (5'-D(*DTP*DTP*DGP*DGP*DAP*DAP*DAP*DAP*DTP*DTP*DTP*DGP*DTP*DTP*DTP*DCP*DAP*DTP*DAP*DG)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA (5'-D(*DAP*DAP*DCP*DTP*DAP*DTP*DGP*DAP*DAP*DAP*DCP*DAP*DAP*DAP*DTP*DTP*DTP*DTP*DCP*DC)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: N
NUCLEAR FACTOR OF ACTIVATED T CELLS protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 2216
95 % 3 8 2601 Flexibility: Medium
Max RMSD: 16.6, Avg RMSD: 9.8
PDBFlex
90 % 3 8 2645
70 % 3 8 2628
50 % 3 8 2600
40 % 3 9 2297
30 % 3 9 2205
Entity #4 | Chains: F
AP-1 FRAGMENT FOS protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71323
95 % 1 2 35692 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 34119
70 % 1 2 30421
50 % 1 2 26052
40 % 1 2 23007
30 % 1 2 19521
Entity #5 | Chains: J
AP-1 FRAGMENT JUN protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 6680
95 % 4 7 6378 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 4 7 6360
70 % 4 7 6195
50 % 4 7 5784
40 % 5 11 2609
30 % 5 11 2455

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.