Sequence Similarity Clusters for the Entities in PDB 12E8

Entity #1 | Chains: L,M
IGG1-KAPPA 2E8 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 12936
95 % 7 18 1890 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 2.0
PDBFlex
90 % 13 73 392
70 % 507 2327 1
50 % 1046 4713 1
40 % 1046 4713 1
30 % 1152 5567 1
Entity #2 | Chains: H,P
IGG1-KAPPA 2E8 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21012
95 % 1 3 12384 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 3 12196
70 % 507 2280 2
50 % 1047 4713 1
40 % 1047 4713 1
30 % 1153 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.