Sequence Similarity Clusters for the Entities in PDB 12E8

Entity #1 | Chains: L,M
IGG1-KAPPA 2E8 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 13128
95 % 7 18 1919
90 % 13 73 435
70 % 523 2392 1
50 % 1080 4843 1
40 % 1080 4843 1
30 % 1190 5705 1
Entity #2 | Chains: H,P
IGG1-KAPPA 2E8 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 21362
95 % 1 3 12550
90 % 1 3 12364
70 % 523 2342 2
50 % 1081 4843 1
40 % 1081 4843 1
30 % 1191 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures