3JDW

CRYSTAL STRUCTURE AND MECHANISM OF L-ARGININE: GLYCINE AMIDINOTRANSFERASE: A MITOCHONDRIAL ENZYME INVOLVED IN CREATINE BIOSYNTHESIS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.181

Literature

Macromolecules
Sequence Display for 3JDW

Classification: TRANSFERASE

Total Structure Weight: 48653.53

Macromolecule Entities
Molecule Chains Length Organism Details
L-ARGININE\:GLYCINE AMIDINOTRANSFERASE A 423 Homo sapiens EC#: 2.1.4.1 IUBMB
Fragment: RESIDUES 64 - 423
Gene Name(s): GATM Gene View AGAT
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ORN
Query on ORN

A L-ornithine
C5 H12 N2 O2
AHLPHDHHMVZTML-BYPYZUCNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ORN N/A in BindingDB
Ki: 253000 nM  BindingMOAD
Ki: 253000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.181
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 83.76 α = 90.00
b = 83.76 β = 90.00
c = 199.65 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1997-01-24
  • Released Date: 1998-01-28
  • Deposition author(s): Humm, A., Fritsche, E., Steinbacher, S., Huber, R.

Revision History

  • Version 1_0: 1998-01-28

    Type: Initial release

  • Version 1_1: 2008-03-25

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance