3J3Y

Atomic-level structure of the entire HIV-1 capsid (186 hexamers + 12 pentamers)


Sequence Display for the Entities in PDB 3J3Y

The graphical representation below shows this entry's sequences as reported in UniProtKB, in the sample (SEQRES), or as observed in the experiment (ATOM). Different 3rd party annotations can be graphically mapped on the sequence and displayed in the Jmol viewer. Read more about the sequence display on our help pages.

The structure 3J3Y has in total 1176 chains. These are represented by 1 sequence-unique entity.

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Chain at: capsid protein

Chain Info

Polymer: 1
Length: 231 residues
Chain Type: polypeptide(L)
Reference: UniProtKB (Q79791)
Up-to-date UniProt Ids are provided by the SIFTS project

Display Parameters

Identical Chains

Show 0 chain Show 1 chain Show 10 chain Show 11 chain Show 12 chain Show 13 chain Show 14 chain Show 15 chain Show 16 chain Show 17 chain Show 18 chain Show 19 chain Show 1A chain Show 1B chain Show 1C chain Show 1D chain Show 1E chain Show 1F chain Show 1G chain Show 1H chain Show 1I chain Show 1J chain Show 1K chain Show 1L chain Show 1M chain Show 1N chain Show 1O chain Show 1P chain Show 1Q chain Show 1R chain Show 1S chain Show 1T chain Show 1U chain Show 1V chain Show 1W chain Show 1X chain Show 1Y chain Show 1Z chain Show 1a chain Show 1b chain Show 1c chain Show 1d chain Show 1e chain Show 1f chain Show 1g chain Show 1h chain Show 1i chain Show 1j chain Show 1k chain Show 1l chain Show 1m chain Show 1n chain Show 1o chain Show 1p chain Show 1q chain Show 1r chain Show 1s chain Show 1t chain Show 1u chain Show 1v chain Show 1w chain Show 1x chain Show 1y chain Show 1z chain Show 2 chain Show 20 chain Show 21 chain Show 22 chain Show 23 chain Show 24 chain Show 25 chain Show 26 chain Show 27 chain Show 28 chain Show 29 chain Show 2A chain Show 2B chain Show 2C chain Show 2D chain Show 2E chain Show 2F chain Show 2G chain Show 2H chain Show 2I chain Show 2J chain Show 2K chain Show 2L chain Show 2M chain Show 2N chain Show 2O chain Show 2P chain Show 2Q chain Show 2R chain Show 2S chain Show 2T chain Show 2U chain Show 2V chain Show 2W chain Show 2X chain Show 2Y chain Show 2Z chain Show 2a chain Show 2b chain Show 2c chain Show 2d chain Show 2e chain Show 2f chain Show 2g chain Show 2h chain Show 2i chain Show 2j chain Show 2k chain Show 2l chain Show 2m chain Show 2n chain Show 2o chain Show 2p chain Show 2q chain Show 2r chain Show 2s chain Show 2t chain Show 2u chain Show 2v chain Show 2w chain Show 2x chain Show 2y chain Show 2z chain Show 3 chain Show 30 chain Show 31 chain Show 32 chain Show 33 chain Show 34 chain Show 35 chain Show 36 chain Show 37 chain Show 38 chain Show 39 chain Show 3A chain Show 3B chain Show 3C chain Show 3D chain Show 3E chain Show 3F chain Show 3G chain Show 3H chain Show 3I chain Show 3J chain Show 3K chain Show 3L chain Show 3M chain Show 3N chain Show 3O chain Show 3P chain Show 3Q chain Show 3R chain Show 3S chain Show 3T chain Show 3U chain Show 3V chain Show 3W chain Show 3X chain Show 3Y chain Show 3Z chain Show 3a chain Show 3b chain Show 3c chain Show 3d chain Show 3e chain Show 3f chain Show 3g chain Show 3h chain Show 3i chain Show 3j chain Show 3k chain Show 3l chain Show 3m chain Show 3n chain Show 3o chain Show 3p chain Show 3q chain Show 3r chain Show 3s chain Show 3t chain Show 3u chain Show 3v chain Show 3w chain Show 3x chain Show 3y chain Show 3z chain Show 4 chain Show 40 chain Show 41 chain Show 42 chain Show 43 chain Show 44 chain Show 45 chain Show 46 chain Show 47 chain Show 48 chain Show 49 chain Show 4A chain Show 4B chain Show 4C chain Show 4D chain Show 4E chain Show 4F chain Show 4G chain Show 4H chain Show 4I chain Show 4J chain Show 4K chain Show 4L chain Show 4M chain Show 4N chain Show 4O chain Show 4P chain Show 4Q chain Show 4R chain Show 4S chain Show 4T chain Show 4U chain Show 4V chain Show 4W chain Show 4X chain Show 4Y chain Show 4Z chain Show 4a chain Show 4b chain Show 4c chain Show 4d chain Show 4e chain Show 4f chain Show 4g chain Show 4h chain Show 4i chain Show 4j chain Show 4k chain Show 4l chain Show 4m chain Show 4n chain Show 4o chain Show 4p chain Show 4q chain Show 4r chain Show 4s chain Show 4t chain Show 4u chain Show 4v chain Show 4w chain Show 4x chain Show 4y chain Show 4z chain Show 5 chain Show 50 chain Show 51 chain Show 52 chain Show 53 chain Show 54 chain Show 55 chain Show 56 chain Show 57 chain Show 58 chain Show 59 chain Show 5A chain Show 5B chain Show 5C chain Show 5D chain Show 5E chain Show 5F chain Show 5G chain Show 5H chain Show 5I chain Show 5J chain Show 5K chain Show 5L chain Show 5M chain Show 5N chain Show 5O chain Show 5P chain Show 5Q chain Show 5R chain Show 5S chain Show 5T chain Show 5U chain Show 5V chain Show 5W chain Show 5X chain Show 5Y chain Show 5Z chain Show 5a chain Show 5b chain Show 5c chain Show 5d chain Show 5e chain Show 5f chain Show 5g chain Show 5h chain Show 5i chain Show 5j chain Show 5k chain Show 5l chain Show 5m chain Show 5n chain Show 5o chain Show 5p chain Show 5q chain Show 5r chain Show 5s chain Show 5t chain Show 5u chain Show 5v chain Show 5w chain Show 5x chain Show 5y chain Show 5z chain Show 6 chain Show 60 chain Show 61 chain Show 62 chain Show 63 chain Show 64 chain Show 65 chain Show 66 chain Show 67 chain Show 68 chain Show 69 chain Show 6A chain Show 6B chain Show 6C chain Show 6D chain Show 6E chain Show 6F chain Show 6G chain Show 6H chain Show 6I chain Show 6J chain Show 6K chain Show 6L chain Show 6M chain Show 6N chain Show 6O chain Show 6P chain Show 6Q chain Show 6R chain Show 6S chain Show 6T chain Show 6U chain Show 6V chain Show 6W chain Show 6X chain Show 6Y chain Show 6Z chain Show 6a chain Show 6b chain Show 6c chain Show 6d chain Show 6e chain Show 6f chain Show 6g chain Show 6h chain Show 6i chain Show 6j chain Show 6k chain Show 6l chain Show 6m chain Show 6n chain Show 6o chain Show 6p chain Show 6q chain Show 6r chain Show 6s chain Show 6t chain Show 6u chain Show 6v chain Show 6w chain Show 6x chain Show 6y chain Show 6z chain Show 7 chain Show 70 chain Show 71 chain Show 72 chain Show 73 chain Show 74 chain Show 75 chain Show 76 chain Show 77 chain Show 78 chain Show 79 chain Show 7A chain Show 7B chain Show 7C chain Show 7D chain Show 7E chain Show 7F chain Show 7G chain Show 7H chain Show 7I chain Show 7J chain Show 7K chain Show 7L chain Show 7M chain Show 7N chain Show 7O chain Show 7P chain Show 7Q chain Show 7R chain Show 7S chain Show 7T chain Show 7U chain Show 7V chain Show 7W chain Show 7X chain Show 7Y chain Show 7Z chain Show 7a chain Show 7b chain Show 7c chain Show 7d chain Show 7e chain Show 7f chain Show 7g chain Show 7h chain Show 7i chain Show 7j chain Show 7k chain Show 7l chain Show 7m chain Show 7n chain Show 7o chain Show 7p chain Show 7q chain Show 7r chain Show 7s chain Show 7t chain Show 7u chain Show 7v chain Show 7w chain Show 7x chain Show 7y chain Show 7z chain Show 8 chain Show 80 chain Show 81 chain Show 82 chain Show 83 chain Show 84 chain Show 85 chain Show 86 chain Show 87 chain Show 88 chain Show 89 chain Show 8A chain Show 8B chain Show 8C chain Show 8D chain Show 8E chain Show 8F chain Show 8G chain Show 8H chain Show 8I chain Show 8J chain Show 8K chain Show 8L chain Show 8M chain Show 8N chain Show 8O chain Show 8P chain Show 8Q chain Show 8R chain Show 8S chain Show 8T chain Show 8U chain Show 8V chain Show 8W chain Show 8X chain Show 8Y chain Show 8Z chain Show 8a chain Show 8b chain Show 8c chain Show 8d chain Show 8e chain Show 8f chain Show 8g chain Show 8h chain Show 8i chain Show 8j chain Show 8k chain Show 8l chain Show 8m chain Show 8n chain Show 8o chain Show 8p chain Show 8q chain Show 8r chain Show 8s chain Show 8t chain Show 8u chain Show 8v chain Show 8w chain Show 8x chain Show 8y chain Show 8z chain Show 9 chain Show 90 chain Show 91 chain Show 92 chain Show 93 chain Show 94 chain Show 95 chain Show 96 chain Show 97 chain Show 98 chain Show 99 chain Show 9A chain Show 9B chain Show 9C chain Show 9D chain Show 9E chain Show 9F chain Show 9G chain Show 9H chain Show 9I chain Show 9J chain Show 9K chain Show 9L chain Show 9M chain Show 9N chain Show 9O chain Show 9P chain Show 9Q chain Show 9R chain Show 9S chain Show 9T chain Show 9U chain Show 9V chain Show 9W chain Show 9X chain Show 9Y chain Show 9Z chain Show 9a chain Show 9b chain Show 9c chain Show 9d chain Show 9e chain Show 9f chain Show 9g chain Show 9h chain Show 9i chain Show 9j chain Show 9k chain Show 9l chain Show 9m chain Show 9n chain Show 9o chain Show 9p chain Show 9q chain Show 9r chain Show 9s chain Show 9t chain Show 9u chain Show 9v chain Show 9w chain Show 9x chain Show 9y chain Show 9z chain Show A chain Show B chain Show C chain Show D chain Show E chain Show F chain Show G chain Show H chain Show I chain Show J chain Show K chain Show L chain Show M chain Show N chain Show O chain Show P chain Show Q chain Show R chain Show S chain Show T chain Show U chain Show V chain Show W chain Show X chain Show Y chain Show Z chain Show a chain Show a0 chain Show a1 chain Show a2 chain Show a3 chain Show a4 chain Show a5 chain Show a6 chain Show a7 chain Show a8 chain Show a9 chain Show aA chain Show aB chain Show aC chain Show aD chain Show aE chain Show aF chain Show aG chain Show aH chain Show aI chain Show aJ chain Show aK chain Show aL chain Show aM chain Show aN chain Show aO chain Show aP chain Show aQ chain Show aR chain Show aS chain Show aT chain Show aU chain Show aV chain Show aW chain Show aX chain Show aY chain Show aZ chain Show aa chain Show ab chain Show ac chain Show ad chain Show ae chain Show af chain Show ag chain Show ah chain Show ai chain Show aj chain Show ak chain Show al chain Show am chain Show an chain Show ao chain Show ap chain Show aq chain Show ar chain Show as chain Show au chain Show av chain Show aw chain Show ax chain Show ay chain Show az chain Show b chain Show b0 chain Show b1 chain Show b2 chain Show b3 chain Show b4 chain Show b5 chain Show b6 chain Show b7 chain Show b8 chain Show b9 chain Show bA chain Show bB chain Show bC chain Show bD chain Show bE chain Show bF chain Show bG chain Show bH chain Show bI chain Show bJ chain Show bK chain Show bL chain Show bM chain Show bN chain Show bO chain Show bP chain Show bQ chain Show bR chain Show bS chain Show bT chain Show bU chain Show bV chain Show bW chain Show bX chain Show bY chain Show bZ chain Show ba chain Show bb chain Show bc chain Show bd chain Show be chain Show bf chain Show bg chain Show bh chain Show bi chain Show bj chain Show bk chain Show bl chain Show bm chain Show bn chain Show bo chain Show bp chain Show bq chain Show br chain Show bs chain Show bt chain Show bu chain Show bv chain Show bw chain Show bx chain Show by chain Show bz chain Show c chain Show c0 chain Show c1 chain Show c2 chain Show c3 chain Show c4 chain Show c5 chain Show c6 chain Show c7 chain Show c8 chain Show c9 chain Show cA chain Show cB chain Show cC chain Show cD chain Show cE chain Show cF chain Show cG chain Show cH chain Show cI chain Show cJ chain Show cK chain Show cL chain Show cM chain Show cN chain Show cO chain Show cP chain Show cQ chain Show cR chain Show cS chain Show cT chain Show cU chain Show cV chain Show cW chain Show cX chain Show cY chain Show cZ chain Show ca chain Show cb chain Show cc chain Show cd chain Show ce chain Show cf chain Show cg chain Show ch chain Show ci chain Show cj chain Show ck chain Show cl chain Show cm chain Show cn chain Show co chain Show cp chain Show cq chain Show cr chain Show cs chain Show ct chain Show cu chain Show cv chain Show cw chain Show cx chain Show cy chain Show cz chain Show d chain Show d0 chain Show d1 chain Show d2 chain Show d3 chain Show d4 chain Show d5 chain Show d6 chain Show d7 chain Show d8 chain Show d9 chain Show dA chain Show dB chain Show dC chain Show dD chain Show dE chain Show dF chain Show dG chain Show dH chain Show dI chain Show dJ chain Show dK chain Show dL chain Show dM chain Show dN chain Show dO chain Show dP chain Show dQ chain Show dR chain Show dS chain Show dT chain Show dU chain Show dV chain Show dW chain Show dX chain Show dY chain Show dZ chain Show da chain Show db chain Show dc chain Show dd chain Show de chain Show df chain Show dg chain Show dh chain Show di chain Show dj chain Show dk chain Show dl chain Show dm chain Show dn chain Show do chain Show dp chain Show dq chain Show dr chain Show ds chain Show dt chain Show du chain Show dv chain Show dw chain Show dx chain Show dy chain Show dz chain Show e chain Show e0 chain Show e1 chain Show e2 chain Show e3 chain Show e4 chain Show e5 chain Show e6 chain Show e7 chain Show e8 chain Show e9 chain Show eA chain Show eB chain Show eC chain Show eD chain Show eE chain Show eF chain Show eG chain Show eH chain Show eI chain Show eJ chain Show eK chain Show eL chain Show eM chain Show eN chain Show eO chain Show eP chain Show eQ chain Show eR chain Show eS chain Show eT chain Show eU chain Show eV chain Show eW chain Show eX chain Show eY chain Show eZ chain Show ea chain Show eb chain Show ec chain Show ed chain Show ee chain Show ef chain Show eg chain Show eh chain Show ei chain Show ej chain Show ek chain Show el chain Show em chain Show en chain Show eo chain Show ep chain Show eq chain Show er chain Show es chain Show et chain Show eu chain Show ev chain Show ew chain Show ex chain Show ey chain Show ez chain Show f chain Show f0 chain Show f1 chain Show f2 chain Show f3 chain Show f4 chain Show f5 chain Show f6 chain Show f7 chain Show f8 chain Show f9 chain Show fA chain Show fB chain Show fC chain Show fD chain Show fE chain Show fF chain Show fG chain Show fH chain Show fI chain Show fJ chain Show fK chain Show fL chain Show fM chain Show fN chain Show fO chain Show fP chain Show fQ chain Show fR chain Show fS chain Show fT chain Show fU chain Show fV chain Show fW chain Show fX chain Show fY chain Show fZ chain Show fa chain Show fb chain Show fc chain Show fd chain Show fe chain Show ff chain Show fg chain Show fh chain Show fi chain Show fj chain Show fk chain Show fl chain Show fm chain Show fn chain Show fo chain Show fp chain Show fq chain Show fr chain Show fs chain Show ft chain Show fu chain Show fv chain Show fw chain Show fx chain Show fy chain Show fz chain Show g chain Show g0 chain Show g1 chain Show g2 chain Show g3 chain Show g4 chain Show g5 chain Show g6 chain Show g7 chain Show g8 chain Show g9 chain Show gA chain Show gB chain Show gC chain Show gD chain Show gE chain Show gF chain Show gG chain Show gH chain Show gI chain Show gJ chain Show gK chain Show gL chain Show gM chain Show gN chain Show gO chain Show gP chain Show gQ chain Show gR chain Show gS chain Show gT chain Show gU chain Show gV chain Show gW chain Show gX chain Show gY chain Show gZ chain Show ga chain Show gb chain Show gc chain Show gd chain Show ge chain Show gf chain Show gg chain Show gh chain Show gi chain Show gj chain Show gk chain Show gl chain Show gm chain Show gn chain Show go chain Show gp chain Show gq chain Show gr chain Show gs chain Show gt chain Show gu chain Show gv chain Show gw chain Show gx chain Show gy chain Show gz chain Show h chain Show h0 chain Show h1 chain Show h2 chain Show h3 chain Show h4 chain Show h5 chain Show h6 chain Show h7 chain Show h8 chain Show h9 chain Show hA chain Show hB chain Show hC chain Show hD chain Show hE chain Show hF chain Show hG chain Show hH chain Show hI chain Show hJ chain Show hK chain Show hL chain Show hM chain Show hN chain Show hO chain Show hP chain Show hQ chain Show hR chain Show hS chain Show hT chain Show hU chain Show hV chain Show hW chain Show hX chain Show hY chain Show hZ chain Show ha chain Show hb chain Show hc chain Show hd chain Show he chain Show hf chain Show hg chain Show hh chain Show hi chain Show hj chain Show hk chain Show hl chain Show hm chain Show hn chain Show ho chain Show hp chain Show hq chain Show hr chain Show hs chain Show ht chain Show hu chain Show hv chain Show hw chain Show hx chain Show hy chain Show hz chain Show i chain Show i0 chain Show i1 chain Show i2 chain Show i3 chain Show i4 chain Show i5 chain Show i6 chain Show i7 chain Show i8 chain Show i9 chain Show iA chain Show iB chain Show iC chain Show iD chain Show iE chain Show iF chain Show iG chain Show iH chain Show iI chain Show iJ chain Show iK chain Show iL chain Show iM chain Show iN chain Show iO chain Show iP chain Show iQ chain Show iR chain Show iS chain Show iT chain Show iU chain Show iV chain Show iW chain Show iX chain Show ia chain Show ib chain Show ic chain Show id chain Show ie chain Show if chain Show ig chain Show ih chain Show ii chain Show ij chain Show ik chain Show il chain Show im chain Show in chain Show io chain Show ip chain Show iq chain Show ir chain Show is chain Show it chain Show iu chain Show iv chain Show iw chain Show ix chain Show iy chain Show iz chain Show j chain Show k chain Show l chain Show m chain Show n chain Show o chain Show p chain Show q chain Show r chain Show s chain Show t chain Show u chain Show v chain Show w chain Show x chain Show y chain Show z chain Show all chains

Currently displayed
SEQRES sequence.
Display external (UniProtKB) sequence



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Annotations Details
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Page parameters

Legend
Symbols used in Protein Modification track:
References

The PDB to UniProt mapping is based on the data provided by the EBI SIFTS project. See also Velankar et al., Nucleic Acids Research 33, D262-265 (2005).

Protein Modification information provided by BioJava-ModFinder: Identification of protein modifications in 3D structures from the Protein Data Bank

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