POP-OUT | CLOSE

An Information Portal to 105339 Biological Macromolecular Structures

Crystal structure of HIV-1 JR-FL gp120 core protein containing the third variable region (V3) complexed with CD4 and the X5 antibody
2B4C

Sequence Display  

The sequence display provides a graphical representation of the UniProtKB, PDB - ATOM and PDB - SEQRES sequences. Different 3rd party annotations can be graphically mapped on the sequence and displayed in the Jmol viewer.

The structure 2B4C has in total 4 chains. These are represented by 4 sequence-unique entities.

Currently viewing unique chains only. show all chains
Sequence & Structure Relationships

  Enable Jmol to view annotations in 3D.

 
Chain C : T-cell surface glycoprotein CD4
FASTA | Sequence & DSSP | Image
Polymer 2
Length: 181 residues
Chain Type: polypeptide(L)
Reference: UniProtKB P01730  
Display Parameters
Currently displayed: SEQRES sequence.
Display external (UniProtKB) sequence
Mouse over an annotation to see more details. Click annotation to enable Jmol.
 
Annotations
Loading...
 
Chain G : envelope glycoprotein
FASTA | Sequence & DSSP | Image
Polymer 1
Length: 344 residues
Chain Type: polypeptide(L)
Reference: UniProtKB Q75760  
Display Parameters
Currently displayed: SEQRES sequence.
Display external (UniProtKB) sequence
Mouse over an annotation to see more details. Click annotation to enable Jmol.
 
Annotations
Loading...
 
Chain H : anti-HIV-1 gp120 immunoglobulin X5 heavy chain
FASTA | Sequence & DSSP | Image
Polymer 4
Length: 235 residues
Chain Type: polypeptide(L)
Display Parameters
No parameters are available for this sequence
Mouse over an annotation to see more details. Click annotation to enable Jmol.
 
Annotations
Loading...
 
Chain L : anti-HIV-1 gp120 immunoglobulin X5 light chain
FASTA | Sequence & DSSP | Image
Polymer 3
Length: 215 residues
Chain Type: polypeptide(L)
Display Parameters
No parameters are available for this sequence
Mouse over an annotation to see more details. Click annotation to enable Jmol.
 
Annotations
Loading...
 
Preferences
Jmol parameters
  Show Jmol
  Jmol width Jmol height
Page parameters
  Sequence to view Label residue ids by
  Sort chains by
  Font size Residues per row
  Chains per page
   
 
References
The PDB to UniProt mapping is based on the data provided by the EBI SIFTS project. See also Velankar et al., Nucleic Acids Research 33, D262-265 (2005).
 
Enable Jmol?  
You need to enable Jmol to view annotations in 3D.   Enable Jmol now?