4OO8

Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNA

Structural Biology Knowledgebase: 4OO8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.222

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4OO8

Classification: Hydrolase / DNA / RNA

Total Structure Weight: 395173.08


Macromolecule Entities
Molecule Chains Length Organism Details
CRISPR-associated endonuclease Cas9/Csn1 A, D 1372 Streptococcus pyogenes EC#: 3.1 IUBMB
Mutation: D10A, C80L, C574E, H840A
Gene Name(s): cas9 csn1 SPy_1046
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (97-MER) B, E 98 synthetic Single guide RNA
DNA (5'-D(*CP*CP*AP*GP*CP*CP*AP*AP*GP*CP*GP*CP*AP*CP*CP*TP*AP*AP*TP*TP*TP*CP*C)-3') C, F 23 synthetic Target DNA


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.222
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 76.71 α = 97.68
b = 105.69 β = 98.43
c = 126.82 γ = 100.31

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-01-31
  • Released Date: 2014-02-26
  • Deposition author(s): Nishimasu, H., Ishitani, R., Nureki, O.

Revision History

  • 2014-12-24
    Type: Citation | Details: Citation update