4N48

Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 Protein in complex with capped RNA fragment

Structural Biology Knowledgebase: 4N48 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 4N48

Classification: TRANSFERASE / RNA

Total Structure Weight: 102229.44


Macromolecule Entities
Molecule Chains Length Organism Details
Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 A, B 428 Homo sapiens EC#: 2.1.1.57 IUBMB
Gene Name(s): CMTR1 Gene View FTSJD2 KIAA0082 MTR1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
capped RNA D, G 4 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MGT
Query on MGT

D, G 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE
C11 H20 N5 O14 P3
BUJQMJUTTBGELS-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SAM
Query on SAM

A, B S-ADENOSYLMETHIONINE
C15 H22 N6 O5 S
MEFKEPWMEQBLKI-FCKMPRQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.182
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 52.21 α = 90.23
b = 60.04 β = 97.83
c = 87.04 γ = 116.25

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-08
  • Released Date: 2014-01-22
  • Deposition author(s): Smietanski, M., Werener, M., Purta, E., Kaminska, K.H., Stepinski, J., Darzynkiewicz, E., Nowotny, M., Bujnicki, J.M

Revision History

No revisions since initial release