4LMG

Crystal structure of AFT2 in complex with DNA

Structural Biology Knowledgebase: 4LMG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.189

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4LMG

Classification: TRANSCRIPTION ACTIVATOR / DNA

Total Structure Weight: 89405.91


Macromolecule Entities
Molecule Chains Length Organism Details
Iron-regulated transcriptional activator AFT2 A, B, C, D 157 Saccharomyces cerevisiae Fragment: UNP RESIDUES 38-193
Gene Name(s): AFT2 YPL202C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*AP*AP*TP*GP*GP*GP*TP*GP*CP*AP*CP*T)-3' E, G 13 synthetic PROMOTER REGION FRAGMENT
5'-D(*AP*AP*GP*TP*GP*CP*AP*CP*CP*CP*AP*TP*T)-3' F, H 13 synthetic PROMOTER REGION FRAGMENT

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.189
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 41.54 α = 90.00
b = 127.45 β = 90.04
c = 70.77 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-10
  • Released Date: 2014-03-05
  • Deposition author(s): Poor, C.B., Sanishvili, R., Schuermann, J.P., He, C.

Revision History

  • 2014-04-23
    Type: Citation | Details: Citation update