4KRR

Crystal structure of Drosophila WntD N-terminal domain-linker (residues 31-240)

Structural Biology Knowledgebase: 4KRR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 4KRR

Classification: SIGNALING PROTEIN

Total Structure Weight: 24920.93

Macromolecule Entities
Molecule Chains Length Organism Details
Wnt inhibitor of Dorsal protein A 221 Drosophila melanogaster Fragment: N-terminal domain-linker
Gene Name(s): wntD Wnt8 CG8458
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.179
  • Space Group: P 41
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 59.63 α = 90.00
b = 59.63 β = 90.00
c = 66.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-16
  • Released Date: 2013-07-10
  • Deposition author(s): Chu, M.L.-H., Choi, H.-J., Ahn, V.E., Daniels, D.L., Nusse, R., Weis, W.I.

Revision History

  • 2013-07-17
    Type: Citation | Details: Citation update