4K4S

Poliovirus polymerase elongation complex (r3_form)

Structural Biology Knowledgebase: 4K4S SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4K4S

Classification: Transferase / rna

Total Structure Weight: 137106.67


Macromolecule Entities
Molecule Chains Length Organism Details
RNA-directed RNA polymerase 3D-POL A, E 471 Enterovirus c EC#: 2.7.7.48 IUBMB
Fragment: unp residues 1749-2209
Mutation: L446D
Gene Name(s):
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*CP*GP*AP*AP*A)-3') B, F 23 synthetic
RNA (5'-R(*UP*GP*UP*UP*CP*GP*CP*GP*AP*GP*AP*GP*A)-3') C, G 13 synthetic
RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') D, H 9 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, E GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, E ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.198
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.77 α = 77.88
b = 58.86 β = 77.80
c = 97.59 γ = 79.97

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-12
  • Released Date: 2013-05-22
  • Deposition author(s): Gong, P., Peersen, O.B.

Revision History

  • 2013-07-03
    Type: Citation | Details: Citation update