4JDR

Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase from escherichia coli

Structural Biology Knowledgebase: 4JDR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.214

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JDR

Classification: OXIDOREDUCTASE

Total Structure Weight: 104341.04

Macromolecule Entities
Molecule Chains Length Organism Details
Dihydrolipoyl dehydrogenase A, B 474 Escherichia coli EC#: 1.8.1.4 IUBMB
Gene Name(s): lpdA lpd b0116 JW0112

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MES
Query on MES

A, B 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.214
  • Space Group: I 4 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 180.00 α = 90.00
b = 180.00 β = 90.00
c = 196.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-25
  • Released Date: 2013-04-24
  • Deposition author(s): Chandrasekhar, K., Arjunan, P., Furey, W.

Revision History

  • 2013-06-12
    Type: Citation | Details: Citation update
  • 2013-04-24
    Type: Citation | Details: Citation update