A Y37F mutant of C.Esp1396I bound to its highest affinity operator site OM
DOI:10.2210/pdb4ivz/pdb   NDB ID: NA2238
Primary Citation
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 61316.38
    Molecule: Regulatory protein
    Polymer: 1 Type: protein Length: 82
    Chains: A, B, E, F
    Mutation: PHE:F.37, PHE:A.37, PHE:B.37, PHE:E.37
    Organism: Enterobacter sp. RFL1396
    Gene Name: esp1396IC
    UniProtKB: Search PDB | Q8GGH0   Protein Feature View
    Molecule: DNA (5'-D(*AP*TP*GP*TP*AP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*GP*AP*CP*A)-3')
    Polymer: 2 Type: dna Length: 19
    Chains: C, G
    Details: 19 base OM operator
    Molecule: DNA (5'-D(*TP*TP*GP*TP*CP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*TP*AP*CP*A)-3')
    Polymer: 3 Type: dna Length: 19
    Chains: D, H
    Details: 19 base OM operator complement
  •   Structure Validation Hide

  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Enterobacter sp.   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
  •   Related PDB Entries Hide
    Identifier Details
    3CLC   Native DNA bound tetramer 
    3FYA   R35A Mutant free protein 
    3G5G   Native free protein 
    3S8Q   Native DNA bound dimer (OL) 
    3UFD   Native DNA bound dimer (OM) 
    4F8D   R46A Mutant free protein 
    4FBI   R46A Mutant free protein 
    4FN3   S52A Mutant free protein 
    4I6R   Native free protein (High Resolution) 
    4I6T   T36A Mutant free protein 
    4I6U   Y37F Mutant free protein 
    4I8T   Native DNA Bound Dimer (OR) 
    4IA8   Y37A Mutant free protein 
  •   External Domain Annotations Hide
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2238
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Martin, R.N.A.,  McGeehan, J.E.,  Kneale, G.G.

    Deposition:   2013-01-23
    Release:   2014-01-29
    Last Modified (REVDAT):   2014-06-18
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  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   3.10
    R-Value: 0.172 (obs.)
    R-Free: 0.215
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 47.54 α = 90.00 
    b = 146.70 β = 93.21 
    c = 47.79 γ = 90.00