4IJT

Human p53 core domain with hot spot mutation R273H (form II)

Structural Biology Knowledgebase: 4IJT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.162

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IJT

Classification: DNA BINDING PROTEIN

Total Structure Weight: 22957.91

Macromolecule Entities
Molecule Chains Length Organism Details
Cellular tumor antigen p53 A 200 Homo sapiens Fragment: DNA binding domain
Mutation: R273H
Gene Name(s): TP53 Gene View P53

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DTT
Query on DTT

A 2,3-DIHYDROXY-1,4-DITHIOBUTANE
1,4-DITHIOTHREITOL (Synonym)
C4 H10 O2 S2
VHJLVAABSRFDPM-IMJSIDKUSA-N
Ligand Explorer
 
JSmol
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.162
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.94 α = 90.00
b = 74.94 β = 90.00
c = 73.31 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-23
  • Released Date: 2013-08-14
  • Deposition author(s): Rozenberg, H., Eldar, A., Diskin-Posner, Y., Shakked, Z.

Revision History

  • 2015-05-20
    Type: Entry title | Details: update entry title
  • 2013-10-23
    Type: Citation | Details: Citation update