4IDQ

human atlastin-1 1-446, N440T, GDPAlF4-

Structural Biology Knowledgebase: 4IDQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IDQ

Classification: HYDROLASE

Total Structure Weight: 208577.67

Macromolecule Entities
Molecule Chains Length Organism Details
Atlastin-1 A, B, C, D 447 Homo sapiens EC#: 3.6.5 IUBMB
Fragment: cytoplasmic domain (UNP residues 1-446)
Mutation: N440T
Gene Name(s): ATL1 Gene View GBP3 Gene View SPG3A

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ALF
Query on ALF

A, B, C, D TETRAFLUOROALUMINATE ION
Al F4
UYOMQIYKOOHAMK-UHFFFAOYSA-J
Ligand Explorer
 
JSmol
GDP
Query on GDP

A, B, C, D GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer
 
JSmol
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
P6G
Query on P6G

A, B, C, D HEXAETHYLENE GLYCOL
POLYETHYLENE GLYCOL PEG400 (Synonym)
C12 H26 O7
IIRDTKBZINWQAW-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.206
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 128.99 α = 90.00
b = 267.08 β = 90.00
c = 62.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-12
  • Released Date: 2013-01-09
  • Deposition author(s): Byrnes, L.J., Singh, A., Szeto, K., Benvin, N.M., O'Donnell, J.P., Zipfel, W.R., Sondermann, H.

Revision History

  • 2013-02-20
    Type: Citation | Details: Citation update
  • 2013-02-06
    Type: Citation | Details: Citation update