4HXD

Diversity of ubiquitin and ISG15 specificity amongst nairoviruses viral ovarian tumor domain proteases

Structural Biology Knowledgebase: 4HXD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HXD

Classification: hydrolase / viral protein

Total Structure Weight: 57469.32

Macromolecule Entities
Molecule Chains Length Organism Details
Polyubiquitin-C A, C 75 Homo sapiens EC#: 3.4.19.12 IUBMB
Gene Name(s): UBC Gene View
RNA-directed RNA polymerase L B, D 174 Dugbe virus EC#: 2.7.7.48 IUBMB 3.4.19.12 IUBMB
Gene Name(s): L

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
3CN
Query on 3CN

A, C 3-AMINOPROPANE
C3 H9 N
WGYKZJWCGVVSQN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.210
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 113.51 α = 90.00
b = 39.99 β = 97.33
c = 114.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-09
  • Released Date: 2013-02-13
  • Deposition author(s): Capodagli, G.C., Pegan, S.D.

Revision History

  • 2013-04-24
    Type: Citation | Details: Citation update