Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX647
4HVS
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/transferase Inhibitor
    Structure Weight: 38424.79
    Molecule: Mast/stem cell growth factor receptor Kit
    Polymer: 1 Type: protein Length: 335
    Chains: A
    EC#: 2.7.10.1   
    Fragment: KIT kinase domain with KID deleted
    Mutation: I563S, V569S, Y609Q, L631S, M651E, I662H, I690H, C691S, K693D, I756S, L762N, V825D, C844S, L890S, L912D, L923D
    Organism: Homo sapiens
    Gene Names: SCFR Gene View for KIT
    UniProtKB: Search PDB | P10721   Protein Feature View
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    647
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    647 C21 H17 F3 N4
    5-(1H-pyrrolo[2,3-b]pyridin-3-ylmethyl)-N- [4-(trifluoromethyl)benzyl]pyridin-2-amine
    647:4HVS
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    647
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    647
    N/Ain BindingDB
    IC50: 16 nM - data from BindingMOAD  
    IC50: 16 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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