4HP1

Crystal structure of Tet3 in complex with a non-CpG dsDNA

Structural Biology Knowledgebase: 4HP1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 4HP1

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 15917.71


Macromolecule Entities
Molecule Chains Length Organism Details
LOC100036628 protein C 72 Xenopus tropicalis Gene Name(s): tet3 LOC100036628
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*CP*CP*AP*CP*(5CM)P*GP*GP*TP*GP*GP*C)-3') A, B 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

C ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5CM
Query on 5CM
A, B DNA LINKING C10 H16 N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.220
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 71.03 α = 90.00
b = 39.52 β = 91.03
c = 57.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-23
  • Released Date: 2012-12-05
  • Deposition author(s): Chao, X., Tempel, W., Bian, C., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

Revision History

  • 2012-12-19
    Type: Citation | Details: Citation update