4HBQ

Crystal structure of a loop deleted mutant of Human MAdCAM-1 D1D2

Structural Biology Knowledgebase: 4HBQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.143

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HBQ

Classification: IMMUNE SYSTEM

Total Structure Weight: 43905.32

Macromolecule Entities
Molecule Chains Length Organism Details
Mucosal addressin cell adhesion molecule 1 A, B 206 Homo sapiens Mutation: D94N, E148Q, ΔE172, ΔE173, ΔE174, ΔP175, ΔQ176, ΔG177, ΔQ178, ΔG179
Gene Name(s): MADCAM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.143
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 58.32 α = 90.00
b = 69.70 β = 90.00
c = 101.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-28
  • Released Date: 2013-01-23
  • Deposition author(s): Springer, T., Yu, Y., Zhu, J.

Revision History

No revisions since initial release